Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMP24477.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (541 aa)    
Predicted Functional Partners:
AMP23290.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.900
AMP25041.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.899
AMP21820.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.898
AMP26131.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.712
AMP24841.1
Formamidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.674
pyrB
Aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
    0.662
carA
Carbamoyl phosphate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarA family.
  
    0.653
carB
Carbamoyl phosphate synthase large subunit; Four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.649
AMP22758.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.623
AMP24478.1
Cutinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.563
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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