STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP24477.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (541 aa)    
Predicted Functional Partners:
AMP23290.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.900
AMP25041.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
  0.900
AMP21820.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
  0.899
AMP26131.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
  0.714
AMP24841.1
Formamidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.674
pyrB
Aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
    0.631
AMP22758.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
  0.625
carB
Carbamoyl phosphate synthase large subunit; Four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.573
AMP24478.1
Cutinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.563
AMP25389.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.556
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.