STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP26313.1TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)    
Predicted Functional Partners:
AMP24646.1
Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.948
AMP24647.1
Rubredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the rubredoxin family.
 
     0.822
AMP26312.1
Rubredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.785
ahcY
S-adenosyl-L-homocysteine hydrolase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
       0.746
AMP24649.1
Thymidylate kinase; Catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.689
AMP23034.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.658
AMP24100.1
Secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.657
AMP24682.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.623
AMP22750.1
Cysteine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.609
AMP24256.1
4-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.571
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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