STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP24962.1F420-dependent protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)    
Predicted Functional Partners:
AMP22664.1
Pyridoxine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.684
AMP23363.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.669
AMP23919.1
F420-dependent protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.605
AMP24963.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.605
AMP23167.1
General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.538
AMP23534.1
General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.
  
    0.538
leuC
Isopropylmalate isomerase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
       0.515
AMP24934.1
Nucleoside-diphosphate sugar epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.502
AMP22084.1
Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.493
AMP22692.1
NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.479
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.