Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMP26403.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)    
Predicted Functional Partners:
AMP22186.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.742
AMP23305.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.721
AMP26404.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.714
AMP26373.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.689
AMP25064.1
PE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.525
AMP25065.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.514
AMP25062.1
hydroxymethylglutaryl-CoA lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.475
AMP25063.1
CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family.
       0.475
AMP24305.1
Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.440
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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