STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMP25213.1Signal transduction histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (68 aa)    
Predicted Functional Partners:
AMP25212.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.833
AMP25211.1
Limonene-1,2-epoxide hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.749
AMP23139.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.533
recX
Recombinase RecX; Modulates RecA activity; Belongs to the RecX family.
       0.530
nucS
Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
      
 0.529
recA
Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
       0.521
AMP25877.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.498
AMP25439.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.437
crgA
Septation inhibitor protein; Involved in cell division; Belongs to the CrgA family.
  
     0.418
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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