STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP25268.1DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (664 aa)    
Predicted Functional Partners:
AMP26437.1
Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.938
AMP25267.1
Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.895
AMP21696.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.884
AMP22373.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.884
glgE
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB; Belongs to the glycosyl hydrolase 13 family. GlgE subfamily.
   
 0.884
AMP26191.1
Trehalose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.884
AMP25269.1
23S rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
     
 0.852
AMP25265.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.757
nadE
NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.727
AMP26438.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.697
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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