STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP25490.1Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)    
Predicted Functional Partners:
AMP25138.1
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.880
AMP26372.1
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.861
AMP26475.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.746
AMP26239.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.612
AMP26370.1
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.596
AMP22845.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
      0.467
AMP25491.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.432
AMP25493.1
Hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.418
AMP25492.1
Acylneuraminate cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.415
AMP25494.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.400
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.