STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMP25558.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)    
Predicted Functional Partners:
lysS-2
lysyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
 
  
 0.925
AMP22105.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.642
AMP26500.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.627
AMP22320.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.603
AMP24033.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.597
AMP25557.1
acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.561
AMP25556.1
Pyruvate kinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.541
AMP21572.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.523
AMP23880.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.496
AMP23614.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.438
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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