Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMP25668.1Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)    
Predicted Functional Partners:
AMP25669.1
Prevent-host-death protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
 
 0.876
AMP25604.1
Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 
 0.764
AMP21855.1
Prevent-host-death protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.763
AMP25641.1
Toxin-antitoxin system; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.712
AMP22280.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.675
AMP24358.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.675
AMP25670.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.536
AMP25667.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.512
vapC
Nucleic acid-binding protein, contains PIN domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
   
 0.482
AMP26029.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.421
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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