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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP25668.1Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)    
Predicted Functional Partners:
AMP21855.1
Prevent-host-death protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.943
AMP25669.1
Prevent-host-death protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
 
 0.910
AMP25641.1
Toxin-antitoxin system; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.832
AMP25604.1
Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 
 0.821
AMP22280.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.552
AMP24358.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.552
AMP25670.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.536
AMP25667.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.512
vapC
Nucleic acid-binding protein, contains PIN domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
   
 0.479
AMP26029.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.437
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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