STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP25727.1Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology. (857 aa)    
Predicted Functional Partners:
AMP25726.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.982
AMP25728.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.623
AMP25729.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.623
secY
Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
 
 0.592
AMP22111.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.586
AMP21795.1
Cutinase; Catalyzes the hydrolysis of cutin, a polyester that forms the structure of plant cuticle.
   
 0.563
AMP21809.1
Cutinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.563
AMP22004.1
Cutinase; Catalyzes the hydrolysis of cutin, a polyester that forms the structure of plant cuticle.
   
 0.563
AMP25884.1
Cutinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.563
AMP26127.1
Cutinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.563
Your Current Organism:
Mycobacterium simiae
NCBI taxonomy Id: 1784
Other names: ATCC 25275, CCUG 29114, CCUG 42427, CIP 104531, DSM 44165, JCM 12377, M. simiae, Mycobacterium habana
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