Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cyaB_2Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1057 aa)    
Predicted Functional Partners:
ORW92415.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.744
cyaA_2
Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.716
cya_1
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.
 
 
 
0.639
htpG
Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity.
 
 
 0.637
crp
Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.617
ORW88531.1
Steroid delta-isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.578
cyaA_3
Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.537
ynaI
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.536
cya
Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.526
ORW96921.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.520
Your Current Organism:
Mycolicibacter terrae
NCBI taxonomy Id: 1788
Other names: ATCC 15755, CCUG 27847, CIP 104321, DSM 43227, JCM 12143, LMG 10394, LMG:10394, M. terrae, Mycobacterium terrae
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