STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nfdA_1Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (450 aa)    
Predicted Functional Partners:
frc_4
acyl-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family.
 
     0.930
echA8_4-2
enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.923
menE_2
AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.834
ORW90874.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.703
ORW90783.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.685
ORW98043.1
Acyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.650
fxsA
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.647
menE_3
AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.628
ORW98278.1
SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.
       0.623
ORW90840.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.602
Your Current Organism:
Mycolicibacter terrae
NCBI taxonomy Id: 1788
Other names: ATCC 15755, CCUG 27847, CIP 104321, DSM 43227, JCM 12143, LMG 10394, LMG:10394, M. terrae, Mycobacterium terrae
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