Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ORW94555.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)    
Predicted Functional Partners:
ORW94554.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.855
ycnJ
Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.809
ctaF
Cytochrome C oxidase subunit IV; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
 
     0.699
ORW93776.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.682
qcrC
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.668
ORW92423.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.618
qcrB
Menaquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.564
ccsB_1
Cytochrome C biogenesis protein ResB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.564
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
  
 0.548
ORW89652.1
Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.535
Your Current Organism:
Mycolicibacter terrae
NCBI taxonomy Id: 1788
Other names: ATCC 15755, CCUG 27847, CIP 104321, DSM 43227, JCM 12143, LMG 10394, LMG:10394, M. terrae, Mycobacterium terrae
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