Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ORX21093.1TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)    
Predicted Functional Partners:
ORX15273.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.646
AWC32_02280
Ornithine decarboxylase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.563
ORX21055.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.507
Pth
peptidyl-tRNA hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.453
ORX21107.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.423
ORX21298.1
RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.
  
   
 0.420
SigG
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.406
Your Current Organism:
Mycobacterium xenopi
NCBI taxonomy Id: 1789
Other names: ATCC 19250, CCUG 28011, CCUG 31306, CIP 104035, DSM 43995, JCM 15661, M. xenopi, Mycobacterium xenopei, NCTC 10042
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