Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
TrcRTwo-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)    
Predicted Functional Partners:
TrcS
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
TcrY
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.918
ORX20792.1
Stage II sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.902
PrrB
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.898
KdpE
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
0.893
senX3
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.869
ORX20686.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.860
MtrB
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.860
MprB
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.842
ORX19955.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.794
Your Current Organism:
Mycobacterium xenopi
NCBI taxonomy Id: 1789
Other names: ATCC 19250, CCUG 28011, CCUG 31306, CIP 104035, DSM 43995, JCM 15661, M. xenopi, Mycobacterium xenopei, NCTC 10042
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