Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ORX20889.1AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (489 aa)    
Predicted Functional Partners:
ORX16828.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.948
Pks2
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.924
ORX21125.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.902
ORX20887.1
cyclohexanecarboxylate-CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.896
Pks13
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.889
ORX20888.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.881
MbtD
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.865
ORX20885.1
Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.842
ORX20886.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.837
ORX20918.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.712
Your Current Organism:
Mycobacterium xenopi
NCBI taxonomy Id: 1789
Other names: ATCC 19250, CCUG 28011, CCUG 31306, CIP 104035, DSM 43995, JCM 15661, M. xenopi, Mycobacterium xenopei, NCTC 10042
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