Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BpaHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa)    
Predicted Functional Partners:
prcA
Proteasome subunit alpha; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
  
 
 
 0.984
PrcB
Proteasome subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.952
Mpa
Proteasome ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.889
glfT1
Galactofuranosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.874
RfbD
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.874
ORX19983.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.857
ORX19982.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.829
PafA
Pup--protein ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.787
pup
Ubiquitin; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation.
  
   
 0.702
ORX16792.1
Pup deamidase/depupylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.694
Your Current Organism:
Mycobacterium xenopi
NCBI taxonomy Id: 1789
Other names: ATCC 19250, CCUG 28011, CCUG 31306, CIP 104035, DSM 43995, JCM 15661, M. xenopi, Mycobacterium xenopei, NCTC 10042
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