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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkGRubredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the rubredoxin family. (58 aa)    
Predicted Functional Partners:
ORX17644.1
Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.963
rubA
Rubredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.887
ORX17642.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.873
ORX20309.1
Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 
 0.838
ORX19488.1
Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.838
ORX10441.1
Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.838
ORX17645.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.746
AhcY
Adenosylhomocysteinase; Catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.607
ORX19851.1
Hydrogenase expression protein HypE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.581
HybA
Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.581
Your Current Organism:
Mycobacterium xenopi
NCBI taxonomy Id: 1789
Other names: ATCC 19250, CCUG 28011, CCUG 31306, CIP 104035, DSM 43995, JCM 15661, M. xenopi, Mycobacterium xenopei, NCTC 10042
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