Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ORX10724.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (544 aa)    
Predicted Functional Partners:
ORX10726.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.912
PonA1
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.877
pimE
Mannosyltransferase; Involved in the fifth mannose transfer of phosphatidylinositol mannoside synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.750
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.734
ORX18939.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.720
ORX21535.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.705
ORX09457.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.655
PriA_2
Binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.644
ORX10835.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.626
Ssb
Single-stranded DNA-binding protein; Binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.601
Your Current Organism:
Mycobacterium xenopi
NCBI taxonomy Id: 1789
Other names: ATCC 19250, CCUG 28011, CCUG 31306, CIP 104035, DSM 43995, JCM 15661, M. xenopi, Mycobacterium xenopei, NCTC 10042
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