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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORX10435.1TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)    
Predicted Functional Partners:
RpsL
30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.719
ORX10434.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.712
rpsL
30S ribosomal protein S7; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. With S4 and S5 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS7 family.
       0.704
ORX10433.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.662
ORX10443.1
Mycofactocin system transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.574
fusA
Elongation factor G; EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.490
LpqF
Serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.476
MmpL11
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.459
ORX21993.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.440
ORX20055.1
MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.436
Your Current Organism:
Mycobacterium xenopi
NCBI taxonomy Id: 1789
Other names: ATCC 19250, CCUG 28011, CCUG 31306, CIP 104035, DSM 43995, JCM 15661, M. xenopi, Mycobacterium xenopei, NCTC 10042
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