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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORX09592.1Phage resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1220 aa)    
Predicted Functional Partners:
ORX09349.1
DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.974
ORX09348.1
Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.973
ORX09347.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.956
ORX09346.1
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.952
RplE
50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.904
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
   0.901
ORX09352.1
Protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.901
rplK
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
 
 0.898
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
   0.896
rplN
50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
   
   0.896
Your Current Organism:
Mycobacterium xenopi
NCBI taxonomy Id: 1789
Other names: ATCC 19250, CCUG 28011, CCUG 31306, CIP 104035, DSM 43995, JCM 15661, M. xenopi, Mycobacterium xenopei, NCTC 10042
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