Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ORX22161.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (543 aa)    
Predicted Functional Partners:
AWC32_19775
Polyketide synthase; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.972
ORX11355.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.885
AWC32_11310
Transposase; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.739
AWC32_19745
Non-ribosomal peptide synthetase; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.729
ORX11340.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.584
ORX21278.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.570
ORX19280.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.568
ORX20459.1
Tail length tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.539
ORX22052.1
Tail length tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.531
AWC32_20690
HNH endonuclease; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.457
Your Current Organism:
Mycobacterium xenopi
NCBI taxonomy Id: 1789
Other names: ATCC 19250, CCUG 28011, CCUG 31306, CIP 104035, DSM 43995, JCM 15661, M. xenopi, Mycobacterium xenopei, NCTC 10042
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