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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORX21901.1Ornithine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (966 aa)    
Predicted Functional Partners:
ORX21902.1
NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.865
ArcA
Arginine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.836
argH
Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.827
ORX20936.1
An AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.800
ORX21900.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.599
ORX20931.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.554
MoxR3
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.484
ORX21899.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.482
argD
Acetylornithine aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.472
ORX19639.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.444
Your Current Organism:
Mycobacterium xenopi
NCBI taxonomy Id: 1789
Other names: ATCC 19250, CCUG 28011, CCUG 31306, CIP 104035, DSM 43995, JCM 15661, M. xenopi, Mycobacterium xenopei, NCTC 10042
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