Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ORX21901.1Ornithine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (966 aa)    
Predicted Functional Partners:
ORX21902.1
NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.853
ORX20936.1
An AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.795
ORX21900.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.588
ORX20931.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.544
MoxR3
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.504
ORX21899.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.473
ORX19639.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.467
MoxR2
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.467
ORX19638.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.457
CbbQ
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.457
Your Current Organism:
Mycobacterium xenopi
NCBI taxonomy Id: 1789
Other names: ATCC 19250, CCUG 28011, CCUG 31306, CIP 104035, DSM 43995, JCM 15661, M. xenopi, Mycobacterium xenopei, NCTC 10042
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