Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ORX21688.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (965 aa)    
Predicted Functional Partners:
ORX21687.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.864
ORX09384.1
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.722
ORX17665.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.716
EccD3
Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.690
ORX20439.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.643
EccB3
Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.630
acpM
Phosphopantetheine-binding protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
   
 
 0.592
ORX19672.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.588
ORX16170.1
acyl-ACP thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.579
ORX17129.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.523
Your Current Organism:
Mycobacterium xenopi
NCBI taxonomy Id: 1789
Other names: ATCC 19250, CCUG 28011, CCUG 31306, CIP 104035, DSM 43995, JCM 15661, M. xenopi, Mycobacterium xenopei, NCTC 10042
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