STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AmDm5_0386TonB-dependent receptor. (1103 aa)    
Predicted Functional Partners:
AmDm5_1075
TonB-dependent receptor.
  
    0.780
AmDm5_0790
TonB-dependent receptor.
  
    0.773
AmDm5_2457
TonB-dependent receptor.
  
    0.756
AmDm5_0512
TonB-dependent receptor.
  
    0.755
AmDm5_2021
TonB-dependent receptor.
  
    0.732
AmDm5_1316
TonB-dependent receptor.
  
    0.718
AmDm5_0959
PDZ domain family protein.
  
     0.712
AmDm5_2101
TonB-dependent receptor.
  
    0.708
AmDm5_0683
TonB-dependent receptor.
  
    0.700
AmDm5_2003
TonB-dependent receptor.
  
    0.690
Your Current Organism:
Acetobacter malorum
NCBI taxonomy Id: 178901
Other names: A. malorum, Acetobacter malorum Cleenwerck et al. 2002, DSM 14337, JCM 17274
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.