Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AmDm5_0184 | AmDm5_0216 | AmDm5_0184 | AmDm5_0216 | Hypothetical protein. | Hypothetical protein. | 0.551 |
AmDm5_0184 | AmDm5_1110 | AmDm5_0184 | AmDm5_1110 | Hypothetical protein. | Phosphoribosyl-AMP cyclohydrolase. | 0.934 |
AmDm5_0184 | AmDm5_2936 | AmDm5_0184 | AmDm5_2936 | Hypothetical protein. | Histidinol dehydrogenase. | 0.794 |
AmDm5_0184 | hisA | AmDm5_0184 | AmDm5_0918 | Hypothetical protein. | Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. | 0.870 |
AmDm5_0184 | hisB | AmDm5_0184 | AmDm5_0916 | Hypothetical protein. | Imidazoleglycerol-phosphate dehydratase. | 0.846 |
AmDm5_0184 | hisF | AmDm5_0184 | AmDm5_0919 | Hypothetical protein. | Imidazole glycerol phosphate synthase cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. | 0.796 |
AmDm5_0184 | hisG | AmDm5_0184 | AmDm5_2937 | Hypothetical protein. | ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily. | 0.934 |
AmDm5_0184 | hisH | AmDm5_0184 | AmDm5_0917 | Hypothetical protein. | Imidazole glycerol phosphate synthase amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. | 0.820 |
AmDm5_0184 | hisZ | AmDm5_0184 | AmDm5_1612 | Hypothetical protein. | ATP phosphoribosyltransferase regulatory subunit; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine. | 0.921 |
AmDm5_0216 | AmDm5_0184 | AmDm5_0216 | AmDm5_0184 | Hypothetical protein. | Hypothetical protein. | 0.551 |
AmDm5_0216 | AmDm5_1110 | AmDm5_0216 | AmDm5_1110 | Hypothetical protein. | Phosphoribosyl-AMP cyclohydrolase. | 0.892 |
AmDm5_0216 | AmDm5_2936 | AmDm5_0216 | AmDm5_2936 | Hypothetical protein. | Histidinol dehydrogenase. | 0.929 |
AmDm5_0216 | hisA | AmDm5_0216 | AmDm5_0918 | Hypothetical protein. | Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. | 0.828 |
AmDm5_0216 | hisB | AmDm5_0216 | AmDm5_0916 | Hypothetical protein. | Imidazoleglycerol-phosphate dehydratase. | 0.954 |
AmDm5_0216 | hisE | AmDm5_0216 | AmDm5_0920 | Hypothetical protein. | Phosphoribosyl-ATP pyrophosphatase. | 0.632 |
AmDm5_0216 | hisF | AmDm5_0216 | AmDm5_0919 | Hypothetical protein. | Imidazole glycerol phosphate synthase cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. | 0.915 |
AmDm5_0216 | hisG | AmDm5_0216 | AmDm5_2937 | Hypothetical protein. | ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily. | 0.848 |
AmDm5_0216 | hisH | AmDm5_0216 | AmDm5_0917 | Hypothetical protein. | Imidazole glycerol phosphate synthase amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. | 0.921 |
AmDm5_0216 | hisZ | AmDm5_0216 | AmDm5_1612 | Hypothetical protein. | ATP phosphoribosyltransferase regulatory subunit; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine. | 0.659 |
AmDm5_1110 | AmDm5_0184 | AmDm5_1110 | AmDm5_0184 | Phosphoribosyl-AMP cyclohydrolase. | Hypothetical protein. | 0.934 |
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