Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AmDm5_1301 | AmDm5_1303 | AmDm5_1301 | AmDm5_1303 | Hypothetical protein. | Hypothetical protein. | 0.661 |
AmDm5_1301 | AmDm5_1304 | AmDm5_1301 | AmDm5_1304 | Hypothetical protein. | Pyridoxine 5'-phosphate synthase. | 0.608 |
AmDm5_1301 | AmDm5_1305 | AmDm5_1301 | AmDm5_1305 | Hypothetical protein. | 4-hydroxythreonine-4-phosphate dehydrogenase. | 0.608 |
AmDm5_1301 | AmDm5_1306 | AmDm5_1301 | AmDm5_1306 | Hypothetical protein. | Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase. | 0.552 |
AmDm5_1301 | anmK | AmDm5_1301 | AmDm5_1302 | Hypothetical protein. | Anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family. | 0.661 |
AmDm5_1303 | AmDm5_1301 | AmDm5_1303 | AmDm5_1301 | Hypothetical protein. | Hypothetical protein. | 0.661 |
AmDm5_1303 | AmDm5_1304 | AmDm5_1303 | AmDm5_1304 | Hypothetical protein. | Pyridoxine 5'-phosphate synthase. | 0.709 |
AmDm5_1303 | AmDm5_1305 | AmDm5_1303 | AmDm5_1305 | Hypothetical protein. | 4-hydroxythreonine-4-phosphate dehydrogenase. | 0.709 |
AmDm5_1303 | AmDm5_1306 | AmDm5_1303 | AmDm5_1306 | Hypothetical protein. | Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase. | 0.641 |
AmDm5_1303 | AmDm5_1307 | AmDm5_1303 | AmDm5_1307 | Hypothetical protein. | Glycosyltransferase. | 0.453 |
AmDm5_1303 | anmK | AmDm5_1303 | AmDm5_1302 | Hypothetical protein. | Anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family. | 0.773 |
AmDm5_1304 | AmDm5_1301 | AmDm5_1304 | AmDm5_1301 | Pyridoxine 5'-phosphate synthase. | Hypothetical protein. | 0.608 |
AmDm5_1304 | AmDm5_1303 | AmDm5_1304 | AmDm5_1303 | Pyridoxine 5'-phosphate synthase. | Hypothetical protein. | 0.709 |
AmDm5_1304 | AmDm5_1305 | AmDm5_1304 | AmDm5_1305 | Pyridoxine 5'-phosphate synthase. | 4-hydroxythreonine-4-phosphate dehydrogenase. | 0.970 |
AmDm5_1304 | AmDm5_1306 | AmDm5_1304 | AmDm5_1306 | Pyridoxine 5'-phosphate synthase. | Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase. | 0.733 |
AmDm5_1304 | AmDm5_1307 | AmDm5_1304 | AmDm5_1307 | Pyridoxine 5'-phosphate synthase. | Glycosyltransferase. | 0.488 |
AmDm5_1304 | AmDm5_2115 | AmDm5_1304 | AmDm5_2115 | Pyridoxine 5'-phosphate synthase. | Holo-[acyl-carrier protein] synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. | 0.490 |
AmDm5_1304 | anmK | AmDm5_1304 | AmDm5_1302 | Pyridoxine 5'-phosphate synthase. | Anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family. | 0.709 |
AmDm5_1304 | coaD | AmDm5_1304 | AmDm5_0162 | Pyridoxine 5'-phosphate synthase. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.496 |
AmDm5_1304 | pdxH | AmDm5_1304 | AmDm5_2653 | Pyridoxine 5'-phosphate synthase. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.964 |
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