STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AmDm5_1420Putative FecR. (335 aa)    
Predicted Functional Partners:
AmDm5_1421
RNA polymerase sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.965
AmDm5_0472
Ferrichrome-iron receptor.
 
 
 0.868
AmDm5_2037
TonB-dependent receptor.
 
 
 0.825
AmDm5_1419
TonB-dependent receptor.
 
    0.797
AmDm5_0006
Putative siderophore receptor protein.
 
 
 0.727
AmDm5_2224
Ferric-pseudobactin receptor.
  
    0.695
AmDm5_1543
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
  
    0.676
AmDm5_1821
TonB-dependent receptor.
  
    0.673
AmDm5_1959
TonB-dependent receptor.
  
    0.670
AmDm5_0034
Hypothetical protein.
  
    0.646
Your Current Organism:
Acetobacter malorum
NCBI taxonomy Id: 178901
Other names: A. malorum, Acetobacter malorum Cleenwerck et al. 2002, DSM 14337, JCM 17274
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