Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AmDm5_1593 | AmDm5_2933 | AmDm5_1593 | AmDm5_2933 | Hypothetical protein. | Hypothetical protein. | 0.651 |
AmDm5_1593 | AmDm5_2938 | AmDm5_1593 | AmDm5_2938 | Hypothetical protein. | Ribonuclease E. | 0.651 |
AmDm5_1593 | pnp | AmDm5_1593 | AmDm5_0166 | Hypothetical protein. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.616 |
AmDm5_1644 | AmDm5_2933 | AmDm5_1644 | AmDm5_2933 | ATP-binding protein ManX; Displays ATPase and GTPase activities. | Hypothetical protein. | 0.740 |
AmDm5_1644 | AmDm5_2938 | AmDm5_1644 | AmDm5_2938 | ATP-binding protein ManX; Displays ATPase and GTPase activities. | Ribonuclease E. | 0.740 |
AmDm5_2933 | AmDm5_1593 | AmDm5_2933 | AmDm5_1593 | Hypothetical protein. | Hypothetical protein. | 0.651 |
AmDm5_2933 | AmDm5_1644 | AmDm5_2933 | AmDm5_1644 | Hypothetical protein. | ATP-binding protein ManX; Displays ATPase and GTPase activities. | 0.740 |
AmDm5_2933 | AmDm5_2934 | AmDm5_2933 | AmDm5_2934 | Hypothetical protein. | Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | 0.855 |
AmDm5_2933 | AmDm5_2936 | AmDm5_2933 | AmDm5_2936 | Hypothetical protein. | Histidinol dehydrogenase. | 0.594 |
AmDm5_2933 | AmDm5_2938 | AmDm5_2933 | AmDm5_2938 | Hypothetical protein. | Ribonuclease E. | 0.807 |
AmDm5_2933 | eno | AmDm5_2933 | AmDm5_2597 | Hypothetical protein. | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.651 |
AmDm5_2933 | hisG | AmDm5_2933 | AmDm5_2937 | Hypothetical protein. | ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily. | 0.613 |
AmDm5_2933 | infA | AmDm5_2933 | AmDm5_2935 | Hypothetical protein. | Translation initiation factor 1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.844 |
AmDm5_2933 | pnp | AmDm5_2933 | AmDm5_0166 | Hypothetical protein. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.856 |
AmDm5_2933 | yacG | AmDm5_2933 | AmDm5_2932 | Hypothetical protein. | Hypothetical protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase. | 0.814 |
AmDm5_2934 | AmDm5_2933 | AmDm5_2934 | AmDm5_2933 | Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | Hypothetical protein. | 0.855 |
AmDm5_2934 | AmDm5_2936 | AmDm5_2934 | AmDm5_2936 | Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | Histidinol dehydrogenase. | 0.674 |
AmDm5_2934 | AmDm5_2938 | AmDm5_2934 | AmDm5_2938 | Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | Ribonuclease E. | 0.603 |
AmDm5_2934 | hisG | AmDm5_2934 | AmDm5_2937 | Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily. | 0.658 |
AmDm5_2934 | infA | AmDm5_2934 | AmDm5_2935 | Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | Translation initiation factor 1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.845 |
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