Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001049355_02915 | lvr_5 | GCA_001049355_02915 | GCA_001049355_02917 | Unannotated protein. | Unannotated protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.749 |
GCA_001049355_02915 | mutM_4 | GCA_001049355_02915 | GCA_001049355_02916 | Unannotated protein. | Unannotated protein; Belongs to the FPG family. | 0.891 |
coaE | mutM_1 | GCA_001049355_01341 | GCA_001049355_02621 | Unannotated protein; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | Unannotated protein. | 0.561 |
coaE | mutM_2 | GCA_001049355_01341 | GCA_001049355_00726 | Unannotated protein; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | Unannotated protein; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.695 |
coaE | mutM_3 | GCA_001049355_01341 | GCA_001049355_02168 | Unannotated protein; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | Unannotated protein; Belongs to the FPG family. | 0.561 |
coaE | mutM_4 | GCA_001049355_01341 | GCA_001049355_02916 | Unannotated protein; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | Unannotated protein; Belongs to the FPG family. | 0.563 |
coaE | nei | GCA_001049355_01341 | GCA_001049355_00291 | Unannotated protein; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | Unannotated protein; Belongs to the FPG family. | 0.561 |
coaE | polA | GCA_001049355_01341 | GCA_001049355_01346 | Unannotated protein; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.872 |
lvr_5 | GCA_001049355_02915 | GCA_001049355_02917 | GCA_001049355_02915 | Unannotated protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Unannotated protein. | 0.749 |
lvr_5 | mutM_4 | GCA_001049355_02917 | GCA_001049355_02916 | Unannotated protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Unannotated protein; Belongs to the FPG family. | 0.867 |
mutM_1 | coaE | GCA_001049355_02621 | GCA_001049355_01341 | Unannotated protein. | Unannotated protein; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.561 |
mutM_1 | mutM_3 | GCA_001049355_02621 | GCA_001049355_02168 | Unannotated protein. | Unannotated protein; Belongs to the FPG family. | 0.710 |
mutM_1 | mutM_4 | GCA_001049355_02621 | GCA_001049355_02916 | Unannotated protein. | Unannotated protein; Belongs to the FPG family. | 0.816 |
mutM_1 | polA | GCA_001049355_02621 | GCA_001049355_01346 | Unannotated protein. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.853 |
mutM_1 | polC | GCA_001049355_02621 | GCA_001049355_01835 | Unannotated protein. | Unannotated protein. | 0.714 |
mutM_1 | ypcP | GCA_001049355_02621 | GCA_001049355_01707 | Unannotated protein. | Unannotated protein. | 0.497 |
mutM_2 | coaE | GCA_001049355_00726 | GCA_001049355_01341 | Unannotated protein; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | Unannotated protein; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.695 |
mutM_2 | mutM_3 | GCA_001049355_00726 | GCA_001049355_02168 | Unannotated protein; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | Unannotated protein; Belongs to the FPG family. | 0.823 |
mutM_2 | mutM_4 | GCA_001049355_00726 | GCA_001049355_02916 | Unannotated protein; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | Unannotated protein; Belongs to the FPG family. | 0.902 |
mutM_2 | polA | GCA_001049355_00726 | GCA_001049355_01346 | Unannotated protein; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.864 |
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