Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001049355_04922 | GCA_001049355_04924 | GCA_001049355_04922 | GCA_001049355_04924 | Unannotated protein. | Unannotated protein. | 0.964 |
GCA_001049355_04922 | GCA_001049355_04933 | GCA_001049355_04922 | GCA_001049355_04933 | Unannotated protein. | Unannotated protein. | 0.416 |
GCA_001049355_04922 | pdxS | GCA_001049355_04922 | GCA_001049355_04927 | Unannotated protein. | Unannotated protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. | 0.797 |
GCA_001049355_04922 | pdxT | GCA_001049355_04922 | GCA_001049355_04929 | Unannotated protein. | Unannotated protein; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. | 0.790 |
GCA_001049355_04922 | pgsA_2 | GCA_001049355_04922 | GCA_001049355_04923 | Unannotated protein. | Unannotated protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.949 |
GCA_001049355_04922 | tesB_3 | GCA_001049355_04922 | GCA_001049355_04928 | Unannotated protein. | Unannotated protein. | 0.806 |
GCA_001049355_04922 | thrS | GCA_001049355_04922 | GCA_001049355_04921 | Unannotated protein. | Unannotated protein; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.926 |
GCA_001049355_04924 | GCA_001049355_04922 | GCA_001049355_04924 | GCA_001049355_04922 | Unannotated protein. | Unannotated protein. | 0.964 |
GCA_001049355_04924 | GCA_001049355_04933 | GCA_001049355_04924 | GCA_001049355_04933 | Unannotated protein. | Unannotated protein. | 0.442 |
GCA_001049355_04924 | pdxS | GCA_001049355_04924 | GCA_001049355_04927 | Unannotated protein. | Unannotated protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. | 0.693 |
GCA_001049355_04924 | pdxT | GCA_001049355_04924 | GCA_001049355_04929 | Unannotated protein. | Unannotated protein; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. | 0.682 |
GCA_001049355_04924 | pgsA_2 | GCA_001049355_04924 | GCA_001049355_04923 | Unannotated protein. | Unannotated protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.983 |
GCA_001049355_04924 | tesB_3 | GCA_001049355_04924 | GCA_001049355_04928 | Unannotated protein. | Unannotated protein. | 0.630 |
GCA_001049355_04924 | thrS | GCA_001049355_04924 | GCA_001049355_04921 | Unannotated protein. | Unannotated protein; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.916 |
GCA_001049355_04933 | GCA_001049355_04922 | GCA_001049355_04933 | GCA_001049355_04922 | Unannotated protein. | Unannotated protein. | 0.416 |
GCA_001049355_04933 | GCA_001049355_04924 | GCA_001049355_04933 | GCA_001049355_04924 | Unannotated protein. | Unannotated protein. | 0.442 |
GCA_001049355_04933 | pdxS | GCA_001049355_04933 | GCA_001049355_04927 | Unannotated protein. | Unannotated protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. | 0.741 |
GCA_001049355_04933 | pdxT | GCA_001049355_04933 | GCA_001049355_04929 | Unannotated protein. | Unannotated protein; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. | 0.741 |
GCA_001049355_04933 | tesB_3 | GCA_001049355_04933 | GCA_001049355_04928 | Unannotated protein. | Unannotated protein. | 0.538 |
GCA_001049355_04933 | thrS | GCA_001049355_04933 | GCA_001049355_04921 | Unannotated protein. | Unannotated protein; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.505 |
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