STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nphR_1Transcriptional activator NphR. (277 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase [NADPH] large chain precursor.
    
  0.739
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.617
feaR_1
Transcriptional activator FeaR.
 
     0.598
cdhR_1
HTH-type transcriptional regulator CdhR.
  
 
 0.543
feaB_2
Phenylacetaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.484
adaA_2
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
  
     0.474
adaA_1
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
  
     0.442
lgrD
Linear gramicidin synthase subunit D; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.442
ala_1
Alanine dehydrogenase.
  
     0.405
Your Current Organism:
Marinomonas spartinae
NCBI taxonomy Id: 1792290
Other names: CECT 8886, KCTC 42958, M. spartinae, Marinomonas spartinae Lucena et al. 2016, strain SMJ19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.