STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002000055_00304Unannotated protein. (675 aa)    
Predicted Functional Partners:
GCA_002000055_03111
Unannotated protein.
 
 0.985
GCA_002000055_03298
Unannotated protein.
 0.985
GCA_002000055_00484
Unannotated protein.
  
 0.982
GCA_002000055_01813
Unannotated protein.
 
0.974
GCA_002000055_03397
Unannotated protein.
 
 
 0.972
GCA_002000055_03336
Unannotated protein.
 
0.970
GCA_002000055_01926
Unannotated protein.
 
 
 0.967
GCA_002000055_02571
Unannotated protein.
 
 0.955
GCA_002000055_02198
Unannotated protein.
  
 0.949
GCA_002000055_02628
Unannotated protein.
    
   0.926
Your Current Organism:
Marinicella sediminis
NCBI taxonomy Id: 1792834
Other names: KCTC 42953, M. sediminis, MCCC 1H00149, Marinicella sp. F2, strain F2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.