ORV08519.1 protein (Mycolicibacterium fallax)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mycolicibacterium fallax

NCBI taxonomy Id: 1793
Other names: ATCC 35219, CCUG 37584, CIP 81.39, DSM 44179, JCM 6405, M. fallax, Mycobacterium fallax

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORV04539.1	ORV08519.1	AWC04_08040	AWC04_02205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.553
ORV04648.1	ORV07706.1	AWC04_08280	AWC04_03150	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
ORV04648.1	ORV08519.1	AWC04_08280	AWC04_02205	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.609
ORV05662.1	ORV07548.1	AWC04_00105	AWC04_03810	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.576
ORV05662.1	ORV08511.1	AWC04_00105	AWC04_02210	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
ORV05662.1	ORV08519.1	AWC04_00105	AWC04_02205	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
ORV07548.1	ORV05662.1	AWC04_03810	AWC04_00105	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
ORV07548.1	ORV08519.1	AWC04_03810	AWC04_02205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
ORV07706.1	ORV04648.1	AWC04_03150	AWC04_08280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
ORV07706.1	ORV08519.1	AWC04_03150	AWC04_02205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
ORV07706.1	ORV10430.1	AWC04_03150	AWC04_00770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
ORV08510.1	ORV08519.1	AWC04_02200	AWC04_02205	acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.725
ORV08511.1	ORV05662.1	AWC04_02210	AWC04_00105	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
ORV08511.1	ORV08519.1	AWC04_02210	AWC04_02205	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
ORV08519.1	ORV04539.1	AWC04_02205	AWC04_08040	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.553
ORV08519.1	ORV04648.1	AWC04_02205	AWC04_08280	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.609
ORV08519.1	ORV05662.1	AWC04_02205	AWC04_00105	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
ORV08519.1	ORV07548.1	AWC04_02205	AWC04_03810	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.558
ORV08519.1	ORV07706.1	AWC04_02205	AWC04_03150	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
ORV08519.1	ORV08510.1	AWC04_02205	AWC04_02200	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	0.725