ORV06641.1 protein (Mycolicibacterium fallax)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mycolicibacterium fallax

NCBI taxonomy Id: 1793
Other names: ATCC 35219, CCUG 37584, CIP 81.39, DSM 44179, JCM 6405, M. fallax, Mycobacterium fallax

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORV06637.1	ORV06638.1	AWC04_04030	AWC04_04035	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
ORV06637.1	ORV06640.1	AWC04_04030	AWC04_04050	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.504
ORV06637.1	ORV06641.1	AWC04_04030	AWC04_04055	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
ORV06637.1	ORV06642.1	AWC04_04030	AWC04_04060	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rhomboid family intramembrane serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
ORV06637.1	ORV06882.1	AWC04_04030	AWC04_04040	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.	0.565
ORV06637.1	clpS	AWC04_04030	AWC04_04045	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent Clp protease adaptor ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.	0.413
ORV06638.1	ORV06637.1	AWC04_04035	AWC04_04030	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
ORV06638.1	ORV06640.1	AWC04_04035	AWC04_04050	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.645
ORV06638.1	ORV06641.1	AWC04_04035	AWC04_04055	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.645
ORV06638.1	ORV06642.1	AWC04_04035	AWC04_04060	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rhomboid family intramembrane serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.687
ORV06638.1	ORV06644.1	AWC04_04035	AWC04_04070	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
ORV06638.1	ORV06882.1	AWC04_04035	AWC04_04040	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.	0.837
ORV06638.1	clpS	AWC04_04035	AWC04_04045	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent Clp protease adaptor ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.	0.658
ORV06638.1	murI	AWC04_04035	AWC04_04065	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.	0.538
ORV06638.1	rph	AWC04_04035	AWC04_04075	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.548
ORV06640.1	ORV06637.1	AWC04_04050	AWC04_04030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.504
ORV06640.1	ORV06638.1	AWC04_04050	AWC04_04035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.645
ORV06640.1	ORV06641.1	AWC04_04050	AWC04_04055	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.855
ORV06640.1	ORV06642.1	AWC04_04050	AWC04_04060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rhomboid family intramembrane serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.889
ORV06640.1	ORV06644.1	AWC04_04050	AWC04_04070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618