ORV06756.1 protein (Mycolicibacterium fallax)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mycolicibacterium fallax

NCBI taxonomy Id: 1793
Other names: ATCC 35219, CCUG 37584, CIP 81.39, DSM 44179, JCM 6405, M. fallax, Mycobacterium fallax

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORV02597.1	ORV06708.1	AWC04_11780	AWC04_04420	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MCE-family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
ORV02597.1	ORV06711.1	AWC04_11780	AWC04_04435	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
ORV02597.1	ORV06754.1	AWC04_11780	AWC04_04710	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
ORV02597.1	ORV06755.1	AWC04_11780	AWC04_04715	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.871
ORV02597.1	ORV06756.1	AWC04_11780	AWC04_04730	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Virulence factor Mce; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
ORV02597.1	ORV06757.1	AWC04_11780	AWC04_04735	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.814
ORV02597.1	ORV06758.1	AWC04_11780	AWC04_04740	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
ORV02597.1	ORV06759.1	AWC04_11780	AWC04_04745	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
ORV02597.1	ORV06899.1	AWC04_11780	AWC04_04720	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Virulence factor Mce; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
ORV02597.1	ORV06900.1	AWC04_11780	AWC04_04725	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Virulence factor Mce; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.894
ORV06708.1	ORV02597.1	AWC04_04420	AWC04_11780	MCE-family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
ORV06708.1	ORV06711.1	AWC04_04420	AWC04_04435	MCE-family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
ORV06708.1	ORV06754.1	AWC04_04420	AWC04_04710	MCE-family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
ORV06708.1	ORV06755.1	AWC04_04420	AWC04_04715	MCE-family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.917
ORV06708.1	ORV06756.1	AWC04_04420	AWC04_04730	MCE-family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Virulence factor Mce; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.892
ORV06708.1	ORV06758.1	AWC04_04420	AWC04_04740	MCE-family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
ORV06708.1	ORV06759.1	AWC04_04420	AWC04_04745	MCE-family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.830
ORV06708.1	ORV06899.1	AWC04_04420	AWC04_04720	MCE-family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Virulence factor Mce; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.898
ORV06708.1	ORV06900.1	AWC04_04420	AWC04_04725	MCE-family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Virulence factor Mce; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
ORV06711.1	ORV02597.1	AWC04_04435	AWC04_11780	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901