ORV06764.1 protein (Mycolicibacterium fallax)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mycolicibacterium fallax

NCBI taxonomy Id: 1793
Other names: ATCC 35219, CCUG 37584, CIP 81.39, DSM 44179, JCM 6405, M. fallax, Mycobacterium fallax

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORU99386.1	ORV06764.1	AWC04_16890	AWC04_04775	5,10-methylenetetrahydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methylenetetrahydrofolate reductase family.	Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
ORU99386.1	metN	AWC04_16890	AWC04_04770	5,10-methylenetetrahydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methylenetetrahydrofolate reductase family.	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.716
ORV06762.1	ORV06764.1	AWC04_04760	AWC04_04775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
ORV06762.1	ORV06901.1	AWC04_04760	AWC04_04765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
ORV06762.1	metN	AWC04_04760	AWC04_04770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.514
ORV06764.1	ORU99386.1	AWC04_04775	AWC04_16890	Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	5,10-methylenetetrahydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methylenetetrahydrofolate reductase family.	0.467
ORV06764.1	ORV06762.1	AWC04_04775	AWC04_04760	Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
ORV06764.1	ORV06875.1	AWC04_04775	AWC04_05440	Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
ORV06764.1	ORV06901.1	AWC04_04775	AWC04_04765	Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ORV06764.1	metN	AWC04_04775	AWC04_04770	Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.999
ORV06875.1	ORV06764.1	AWC04_05440	AWC04_04775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
ORV06875.1	metN	AWC04_05440	AWC04_04770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.514
ORV06901.1	ORV06762.1	AWC04_04765	AWC04_04760	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
ORV06901.1	ORV06764.1	AWC04_04765	AWC04_04775	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ORV06901.1	metN	AWC04_04765	AWC04_04770	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.999
metN	ORU99386.1	AWC04_04770	AWC04_16890	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	5,10-methylenetetrahydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methylenetetrahydrofolate reductase family.	0.716
metN	ORV06762.1	AWC04_04770	AWC04_04760	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
metN	ORV06764.1	AWC04_04770	AWC04_04775	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
metN	ORV06875.1	AWC04_04770	AWC04_05440	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
metN	ORV06901.1	AWC04_04770	AWC04_04765	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999