ORV05584.1 protein (Mycolicibacterium fallax)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mycolicibacterium fallax

NCBI taxonomy Id: 1793
Other names: ATCC 35219, CCUG 37584, CIP 81.39, DSM 44179, JCM 6405, M. fallax, Mycobacterium fallax

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AWC04_07460	ORV05584.1	AWC04_07460	AWC04_06255	Cadmium-transporting ATPase; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
ORV04337.1	ORV05584.1	AWC04_09340	AWC04_06255	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.731
ORV05463.1	ORV05464.1	AWC04_06240	AWC04_06245	Phosphoglycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ORV05463.1	ORV05465.1	AWC04_06240	AWC04_06250	Phosphoglycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ORV05463.1	ORV05467.1	AWC04_06240	AWC04_06270	Phosphoglycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	23S rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.516
ORV05463.1	ORV05584.1	AWC04_06240	AWC04_06255	Phosphoglycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
ORV05463.1	ORV05585.1	AWC04_06240	AWC04_06275	Phosphoglycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
ORV05463.1	dxs	AWC04_06240	AWC04_06260	Phosphoglycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.	0.634
ORV05463.1	nhaA	AWC04_06240	AWC04_06265	Phosphoglycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium:proton antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.	0.573
ORV05464.1	ORV05463.1	AWC04_06245	AWC04_06240	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoglycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ORV05464.1	ORV05465.1	AWC04_06245	AWC04_06250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ORV05464.1	ORV05467.1	AWC04_06245	AWC04_06270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	23S rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.516
ORV05464.1	ORV05584.1	AWC04_06245	AWC04_06255	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
ORV05464.1	ORV05585.1	AWC04_06245	AWC04_06275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
ORV05464.1	dxs	AWC04_06245	AWC04_06260	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.	0.641
ORV05464.1	nhaA	AWC04_06245	AWC04_06265	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium:proton antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.	0.526
ORV05465.1	ORV05463.1	AWC04_06250	AWC04_06240	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoglycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ORV05465.1	ORV05464.1	AWC04_06250	AWC04_06245	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ORV05465.1	ORV05467.1	AWC04_06250	AWC04_06270	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	23S rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.516
ORV05465.1	ORV05584.1	AWC04_06250	AWC04_06255	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.707