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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORV04539.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (782 aa)    
Predicted Functional Partners:
AWC04_01660
Hypothetical protein; Catalyzes the hydrolysis of cutin, a polyester that forms the structure of plant cuticle.
   
 0.647
ORV08519.1
GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.647
ORU96659.1
Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.647
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
    
  0.595
ORV03496.1
Competence/damage-inducible protein A; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family.
    
  0.516
ORV07731.1
1,4-beta-glucanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase family 6.
  
 0.502
ORV03546.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.502
Your Current Organism:
Mycolicibacterium fallax
NCBI taxonomy Id: 1793
Other names: ATCC 35219, CCUG 37584, CIP 81.39, DSM 44179, JCM 6405, M. fallax, Mycobacterium fallax
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