ORV04060.1 protein (Mycolicibacterium fallax)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mycolicibacterium fallax

NCBI taxonomy Id: 1793
Other names: ATCC 35219, CCUG 37584, CIP 81.39, DSM 44179, JCM 6405, M. fallax, Mycobacterium fallax

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AWC04_13270	ORU96675.1	AWC04_13270	AWC04_19020	Salicylate synthase; Catalyzes conversion of chorismate to salicylate, in mycobactin siderophore construction; requires Mg(2+) for function; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AWC04_13270	ORV04060.1	AWC04_13270	AWC04_09520	Salicylate synthase; Catalyzes conversion of chorismate to salicylate, in mycobactin siderophore construction; requires Mg(2+) for function; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.404
AWC04_13270	ORV05662.1	AWC04_13270	AWC04_00105	Salicylate synthase; Catalyzes conversion of chorismate to salicylate, in mycobactin siderophore construction; requires Mg(2+) for function; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AWC04_13270	ORV08502.1	AWC04_13270	AWC04_02155	Salicylate synthase; Catalyzes conversion of chorismate to salicylate, in mycobactin siderophore construction; requires Mg(2+) for function; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.404
ORU96675.1	AWC04_13270	AWC04_19020	AWC04_13270	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Salicylate synthase; Catalyzes conversion of chorismate to salicylate, in mycobactin siderophore construction; requires Mg(2+) for function; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ORU96675.1	ORV04060.1	AWC04_19020	AWC04_09520	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.739
ORU96675.1	ORV05662.1	AWC04_19020	AWC04_00105	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ORU96675.1	ORV08502.1	AWC04_19020	AWC04_02155	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.739
ORU99288.1	ORV01165.1	AWC04_16745	AWC04_14360	Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitric oxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
ORU99288.1	ORV04060.1	AWC04_16745	AWC04_09520	Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.745
ORU99288.1	ORV08502.1	AWC04_16745	AWC04_02155	Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.745
ORV01165.1	ORU99288.1	AWC04_14360	AWC04_16745	Nitric oxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
ORV01165.1	ORV04060.1	AWC04_14360	AWC04_09520	Nitric oxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.674
ORV01165.1	ORV08502.1	AWC04_14360	AWC04_02155	Nitric oxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.712
ORV01349.1	ORV04060.1	AWC04_13900	AWC04_09520	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.418
ORV01349.1	ORV08502.1	AWC04_13900	AWC04_02155	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.418
ORV04060.1	AWC04_13270	AWC04_09520	AWC04_13270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Salicylate synthase; Catalyzes conversion of chorismate to salicylate, in mycobactin siderophore construction; requires Mg(2+) for function; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
ORV04060.1	ORU96675.1	AWC04_09520	AWC04_19020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
ORV04060.1	ORU99288.1	AWC04_09520	AWC04_16745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.745
ORV04060.1	ORV01165.1	AWC04_09520	AWC04_14360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Nitric oxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.674