ORV01639.1 protein (Mycolicibacterium fallax)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mycolicibacterium fallax

NCBI taxonomy Id: 1793
Other names: ATCC 35219, CCUG 37584, CIP 81.39, DSM 44179, JCM 6405, M. fallax, Mycobacterium fallax

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORV01636.1	ORV01637.1	AWC04_13750	AWC04_13755	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	Type VII secretion AAA-ATPase EccA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
ORV01636.1	ORV01638.1	AWC04_13750	AWC04_13760	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833
ORV01636.1	ORV01639.1	AWC04_13750	AWC04_13765	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	Secretion protein EccC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
ORV01636.1	ORV01640.1	AWC04_13750	AWC04_13770	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	Cell motility protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
ORV01636.1	ORV01641.1	AWC04_13750	AWC04_13775	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.441
ORV01636.1	ORV05293.1	AWC04_13750	AWC04_07055	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.490
ORV01636.1	ORV05300.1	AWC04_13750	AWC04_07090	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.490
ORV01637.1	ORV01636.1	AWC04_13755	AWC04_13750	Type VII secretion AAA-ATPase EccA; Derived by automated computational analysis using gene prediction method: Protein Homology.	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.677
ORV01637.1	ORV01638.1	AWC04_13755	AWC04_13760	Type VII secretion AAA-ATPase EccA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
ORV01637.1	ORV01639.1	AWC04_13755	AWC04_13765	Type VII secretion AAA-ATPase EccA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein EccC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
ORV01637.1	ORV01640.1	AWC04_13755	AWC04_13770	Type VII secretion AAA-ATPase EccA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell motility protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
ORV01637.1	ORV01641.1	AWC04_13755	AWC04_13775	Type VII secretion AAA-ATPase EccA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.800
ORV01637.1	ORV05293.1	AWC04_13755	AWC04_07055	Type VII secretion AAA-ATPase EccA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
ORV01637.1	ORV05300.1	AWC04_13755	AWC04_07090	Type VII secretion AAA-ATPase EccA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
ORV01638.1	ORV01636.1	AWC04_13760	AWC04_13750	Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.833
ORV01638.1	ORV01637.1	AWC04_13760	AWC04_13755	Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion AAA-ATPase EccA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
ORV01638.1	ORV01639.1	AWC04_13760	AWC04_13765	Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein EccC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ORV01638.1	ORV01640.1	AWC04_13760	AWC04_13770	Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell motility protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
ORV01638.1	ORV01641.1	AWC04_13760	AWC04_13775	Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.885
ORV01638.1	ORV05293.1	AWC04_13760	AWC04_07055	Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986