ORV01198.1 protein (Mycolicibacterium fallax)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mycolicibacterium fallax

NCBI taxonomy Id: 1793
Other names: ATCC 35219, CCUG 37584, CIP 81.39, DSM 44179, JCM 6405, M. fallax, Mycobacterium fallax

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORU96778.1	ORU99797.1	AWC04_18740	AWC04_16390	Photosystem I reaction center subunit VIII; Derived by automated computational analysis using gene prediction method: Protein Homology.	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
ORU96778.1	ORV01198.1	AWC04_18740	AWC04_14535	Photosystem I reaction center subunit VIII; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
ORU96778.1	ORV04272.1	AWC04_18740	AWC04_08970	Photosystem I reaction center subunit VIII; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-phospho-L-lactate transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
ORU96778.1	ORV04273.1	AWC04_18740	AWC04_08975	Photosystem I reaction center subunit VIII; Derived by automated computational analysis using gene prediction method: Protein Homology.	F420-0--gamma-glutamyl ligase; Catalyzes the addition of gamma linked glutamate to 7,8-didemethyl-8-hydroxy-5-deazariboflavin coenzyme F420-0); Derived by automated computational analysis using gene prediction method: Protein Homology.	0.660
ORU96778.1	ORV05109.1	AWC04_18740	AWC04_07480	Photosystem I reaction center subunit VIII; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.487
ORU96778.1	ORV05672.1	AWC04_18740	AWC04_00155	Photosystem I reaction center subunit VIII; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
ORU99010.1	ORV01198.1	AWC04_18005	AWC04_14535	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.731
ORU99010.1	ORV04272.1	AWC04_18005	AWC04_08970	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-phospho-L-lactate transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.598
ORU99010.1	ORV04273.1	AWC04_18005	AWC04_08975	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	F420-0--gamma-glutamyl ligase; Catalyzes the addition of gamma linked glutamate to 7,8-didemethyl-8-hydroxy-5-deazariboflavin coenzyme F420-0); Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
ORU99010.1	ORV05109.1	AWC04_18005	AWC04_07480	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
ORU99010.1	ORV05672.1	AWC04_18005	AWC04_00155	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.706
ORU99797.1	ORU96778.1	AWC04_16390	AWC04_18740	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Photosystem I reaction center subunit VIII; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
ORU99797.1	ORV01198.1	AWC04_16390	AWC04_14535	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
ORU99797.1	ORV04272.1	AWC04_16390	AWC04_08970	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-phospho-L-lactate transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
ORU99797.1	ORV04273.1	AWC04_16390	AWC04_08975	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	F420-0--gamma-glutamyl ligase; Catalyzes the addition of gamma linked glutamate to 7,8-didemethyl-8-hydroxy-5-deazariboflavin coenzyme F420-0); Derived by automated computational analysis using gene prediction method: Protein Homology.	0.685
ORU99797.1	ORV05109.1	AWC04_16390	AWC04_07480	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
ORU99797.1	ORV05672.1	AWC04_16390	AWC04_00155	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.695
ORV00074.1	ORV01198.1	AWC04_16135	AWC04_14535	Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
ORV01198.1	ORU96778.1	AWC04_14535	AWC04_18740	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Photosystem I reaction center subunit VIII; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
ORV01198.1	ORU99010.1	AWC04_14535	AWC04_18005	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.731