STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AWC04_16640Carbonic anhydrase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)    
Predicted Functional Partners:
ORU99839.1
PhoR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.978
ORV09074.1
PhoR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.912
ORU99833.1
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.906
ORU99852.1
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.904
ORV04260.1
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.901
ORV10447.1
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.898
ORV03617.1
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.897
ORV03213.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.897
ORV06690.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.890
kgd
Alpha-ketoglutarate decarboxylase; Kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.819
Your Current Organism:
Mycolicibacterium fallax
NCBI taxonomy Id: 1793
Other names: ATCC 35219, CCUG 37584, CIP 81.39, DSM 44179, JCM 6405, M. fallax, Mycobacterium fallax
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