ORU95615.1 protein (Mycolicibacterium fallax)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mycolicibacterium fallax

NCBI taxonomy Id: 1793
Other names: ATCC 35219, CCUG 37584, CIP 81.39, DSM 44179, JCM 6405, M. fallax, Mycobacterium fallax

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORU95607.1	ORU95608.1	AWC04_19745	AWC04_19750	Lipid-transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
ORU95607.1	ORU95613.1	AWC04_19745	AWC04_19775	Lipid-transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
ORU95607.1	ORU95614.1	AWC04_19745	AWC04_19780	Lipid-transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA synthetase; Activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ORU95607.1	ORU95615.1	AWC04_19745	AWC04_19785	Lipid-transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
ORU95607.1	ORV05665.1	AWC04_19745	AWC04_00120	Lipid-transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	beta-hydroxyacyl-ACP dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
ORU95607.1	ORV05666.1	AWC04_19745	AWC04_00125	Lipid-transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
ORU95607.1	ORV06747.1	AWC04_19745	AWC04_04670	Lipid-transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.569
ORU95608.1	ORU95607.1	AWC04_19750	AWC04_19745	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipid-transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
ORU95608.1	ORU95613.1	AWC04_19750	AWC04_19775	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.757
ORU95608.1	ORU95614.1	AWC04_19750	AWC04_19780	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA synthetase; Activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.745
ORU95608.1	ORU95615.1	AWC04_19750	AWC04_19785	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.613
ORU95608.1	ORV05665.1	AWC04_19750	AWC04_00120	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	beta-hydroxyacyl-ACP dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
ORU95608.1	ORV05666.1	AWC04_19750	AWC04_00125	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ORU95612.1	ORU95613.1	AWC04_19770	AWC04_19775	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.810
ORU95612.1	ORU95614.1	AWC04_19770	AWC04_19780	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA synthetase; Activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
ORU95612.1	ORU95615.1	AWC04_19770	AWC04_19785	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
ORU95612.1	ORU95616.1	AWC04_19770	AWC04_19790	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Thiamine-pyrophosphate requiring enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
ORU95612.1	ORV05662.1	AWC04_19770	AWC04_00105	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
ORU95613.1	ORU95607.1	AWC04_19775	AWC04_19745	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipid-transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
ORU95613.1	ORU95608.1	AWC04_19775	AWC04_19750	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.757