SFI31320.1 protein (Hymenobacter sp. unc380mfsha31)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFI31320.1

NADPH:quinone reductase. (301 aa)

Predicted Functional Partners:

SFI71607.1

0.720

SFI78112.1

0.691

SFI37193.1

0.682

SFI27485.1

0.677

SFI32970.1

0.649

SFI19601.1

0.610

SFI32293.1

0.608

SFI31343.1

0.570

SFI18206.1

0.528

SFI18219.1

0.528

Your Current Organism:

Hymenobacter sp. unc380mfsha31

NCBI taxonomy Id: 1793723
Other names: H. sp. unc380mfsha3.1, Hymenobacter sp. unc380mfsha3.1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFI18206.1	SFI18219.1	SAMN04487751_0163	SAMN04487751_0164	Acyl dehydratase.	MaoC like domain-containing protein.	0.946
SFI18206.1	SFI19601.1	SAMN04487751_0163	SAMN04487751_0279	Acyl dehydratase.	Phosphate acetyltransferase.	0.685
SFI18206.1	SFI31320.1	SAMN04487751_0163	SAMN04487751_1057	Acyl dehydratase.	NADPH:quinone reductase.	0.528
SFI18206.1	SFI32293.1	SAMN04487751_0163	SAMN04487751_1119	Acyl dehydratase.	Acyl carrier protein.	0.765
SFI18206.1	SFI32970.1	SAMN04487751_0163	SAMN04487751_1166	Acyl dehydratase.	3-hydroxyacyl-CoA dehydrogenase.	0.829
SFI18206.1	SFI37193.1	SAMN04487751_0163	SAMN04487751_1453	Acyl dehydratase.	Acetaldehyde dehydrogenase / alcohol dehydrogenase.	0.721
SFI18206.1	SFI78112.1	SAMN04487751_0163	SAMN04487751_2961	Acyl dehydratase.	NADPH:quinone reductase.	0.528
SFI18219.1	SFI18206.1	SAMN04487751_0164	SAMN04487751_0163	MaoC like domain-containing protein.	Acyl dehydratase.	0.946
SFI18219.1	SFI19601.1	SAMN04487751_0164	SAMN04487751_0279	MaoC like domain-containing protein.	Phosphate acetyltransferase.	0.685
SFI18219.1	SFI31320.1	SAMN04487751_0164	SAMN04487751_1057	MaoC like domain-containing protein.	NADPH:quinone reductase.	0.528
SFI18219.1	SFI32293.1	SAMN04487751_0164	SAMN04487751_1119	MaoC like domain-containing protein.	Acyl carrier protein.	0.761
SFI18219.1	SFI32970.1	SAMN04487751_0164	SAMN04487751_1166	MaoC like domain-containing protein.	3-hydroxyacyl-CoA dehydrogenase.	0.805
SFI18219.1	SFI37193.1	SAMN04487751_0164	SAMN04487751_1453	MaoC like domain-containing protein.	Acetaldehyde dehydrogenase / alcohol dehydrogenase.	0.721
SFI18219.1	SFI78112.1	SAMN04487751_0164	SAMN04487751_2961	MaoC like domain-containing protein.	NADPH:quinone reductase.	0.528
SFI19601.1	SFI18206.1	SAMN04487751_0279	SAMN04487751_0163	Phosphate acetyltransferase.	Acyl dehydratase.	0.685
SFI19601.1	SFI18219.1	SAMN04487751_0279	SAMN04487751_0164	Phosphate acetyltransferase.	MaoC like domain-containing protein.	0.685
SFI19601.1	SFI27485.1	SAMN04487751_0279	SAMN04487751_0809	Phosphate acetyltransferase.	PTS system D-fructose-specific IIA component (F1P-forming), Frc family /PTS system D-fructose-specific IIB component (F1P-forming), Frc family /PTS system D-fructose-specific IIC component (F1P-forming), Frc family.	0.645
SFI19601.1	SFI31320.1	SAMN04487751_0279	SAMN04487751_1057	Phosphate acetyltransferase.	NADPH:quinone reductase.	0.610
SFI19601.1	SFI32293.1	SAMN04487751_0279	SAMN04487751_1119	Phosphate acetyltransferase.	Acyl carrier protein.	0.793
SFI19601.1	SFI32970.1	SAMN04487751_0279	SAMN04487751_1166	Phosphate acetyltransferase.	3-hydroxyacyl-CoA dehydrogenase.	0.926