STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI63628.1ATP-dependent RNA helicase CsdA. (574 aa)    
Predicted Functional Partners:
SFI56719.1
LSU ribosomal protein L4P.
   
 0.927
SFI18538.1
Large subunit ribosomal protein L10.
   
 0.919
SFI56814.1
Translation elongation factor 2 (EF-2/EF-G).
   
 0.919
SFI38919.1
Polyribonucleotide nucleotidyltransferase.
  
 0.917
SFI33872.1
16S rRNA (cytosine967-C5)-methyltransferase.
  
 0.916
SFI56411.1
LSU ribosomal protein L30P.
   
 0.902
SFI22953.1
ATP-dependent helicase HrpA.
   
 0.896
SFI56705.1
LSU ribosomal protein L23P.
   
 0.894
SFI40222.1
ATP synthase F1 subcomplex alpha subunit.
   
 0.881
SFI40201.1
ATP synthase F1 subcomplex gamma subunit.
    
 0.880
Your Current Organism:
Hymenobacter sp. unc380mfsha31
NCBI taxonomy Id: 1793723
Other names: H. sp. unc380mfsha3.1, Hymenobacter sp. unc380mfsha3.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.