STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ04652.1Protein of unknown function DUF318, transmembrane; PFAM: Predicted permease; COGs: COG0701 permease; InterPro IPR005524; KEGG: ter:Tery_3807 permease; PFAM: Protein of unknown function DUF318, transmembrane; SPTR: Permease. (359 aa)    
Predicted Functional Partners:
AFZ04653.1
Hypothetical protein; PFAM: Domain of unknown function (DUF1980); TIGRFAM: TIGR03943 family protein; COGs: COG3689 membrane protein; KEGG: ter:Tery_3808 hypothetical protein; SPTR: Putative uncharacterized protein.
 
  
 0.926
AFZ04655.1
KEGG: ava:Ava_3210 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.526
AFZ07203.1
KEGG: ter:Tery_3541 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.509
AFZ08314.1
PFAM: Multicopper oxidase; COGs: COG2132 Putative multicopper oxidase; InterPro IPR011707:IPR011706:IPR006311; KEGG: naz:Aazo_1784 multicopper oxidase type 3; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; SPTR: Twin-arginine translocation pathway signal.
  
  
 0.508
AFZ08269.1
PFAM: Fatty acid desaturase; COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: ter:Tery_2925 fatty acid desaturase; PFAM: Fatty acid desaturase, type 1; SPTR: Fatty acid desaturase.
  
     0.485
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
   
    0.429
AFZ05345.1
PFAM: Protein of unknown function (DUF2996); KEGG: npu:Npun_F6444 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.414
AFZ07790.1
PFAM: Recombinase; Resolvase, N terminal domain; COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR011109:IPR006119; KEGG: ana:alr2075 hypothetical protein; PFAM: Recombinase; SMART: Resolvase, N-terminal; SPTR: Recombinase.
  
    0.410
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.