STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ04689.1CRISPR-associated protein Cas6; PFAM: Uncharacterized conserved protein (DUF2276); TIGRFAM: CRISPR-associated endoribonuclease Cas6; COGs: COG5551 conserved hypothetical protein; InterPro IPR010156:IPR019267:IPR013249; KEGG: ana:alr1482 hypothetical protein; PFAM: Protein of unknown function DUF2276; RNA polymerase sigma factor 70, region 4 type 2; SPTR: CRISPR-associated protein Cas6; TIGRFAM: CRISPR-associated protein, Cas6. (374 aa)    
Predicted Functional Partners:
AFZ07307.1
CRISPR-associated protein, Crm2 family; TIGRFAM: CRISPR-associated protein Cas10/Cmr2, subtype III-B; InterPro IPR013407; KEGG: naz:Aazo_2384 Crm2 family CRISPR-associated protein; SPTR: CRISPR-associated protein, Crm2 family; TIGRFAM: CRISPR-associated protein Crm2.
 
  
 0.763
AFZ07300.1
Protein of unknown function DUF324; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, SSO1426 family; COGs: COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537; KEGG: naz:Aazo_2392 hypothetical protein; PFAM: Protein of unknown function DUF324; SPTR: Putative uncharacterized protein.
 
   
 0.746
AFZ07306.1
Protein of unknown function DUF324; PFAM: RAMP superfamily; COGs: COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537; KEGG: naz:Aazo_2385 hypothetical protein; PFAM: Protein of unknown function DUF324; SPTR: Putative uncharacterized protein.
 
   
 0.744
AFZ07298.1
Hypothetical protein; PFAM: RAMP superfamily; KEGG: naz:Aazo_2394 hypothetical protein; SPTR: Putative uncharacterized protein.
 
   
 0.743
AFZ07305.1
PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Csx10 family; InterPro IPR005537:IPR013490; KEGG: naz:Aazo_2386 Csx10 family CRISPR-associated RAMP protein; PFAM: Protein of unknown function DUF324; SPTR: Putative uncharacterized protein; TIGRFAM: CRISPR-associated RAMP Csx10.
 
     0.732
AFZ07302.1
PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, SSO1426 family; COGs: COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537:IPR013411; KEGG: naz:Aazo_2390 SSO1426 family CRISPR-associated RAMP protein; PFAM: Protein of unknown function DUF324; SPTR: Putative uncharacterized protein; TIGRFAM: CRISPR-associated RAMP TM1809.
 
   
 0.729
AFZ06739.1
Putative GAF sensor protein; PFAM: GAF domain; COGs: COG2203 FOG: GAF domain; InterPro IPR003018; KEGG: npu:Npun_F4973 putative GAF sensor protein; PFAM: GAF; SMART: GAF; SPTR: Putative uncharacterized protein.
  
     0.703
AFZ06850.1
KEGG: ava:Ava_1988 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.699
AFZ10175.1
TIGRFAM: NHLM bacteriocin system secretion protein; COGs: COG1196 Chromosome segregation ATPase; InterPro IPR022275; KEGG: npu:Npun_F5048 secretion protein HlyD; SPTR: Putative chromosome segregation ATPase-like protein; TIGRFAM: NHPM bacteriocin system secretion protein, HylD.
  
     0.515
AFZ09634.1
KEGG: ana:all4038 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.499
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.