STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smcCondensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1267 aa)    
Predicted Functional Partners:
AFZ04827.1
Condensin subunit ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
 
 
 0.871
AFZ06805.1
PFAM: Domain of unknown function (DUF814); Fibronectin-binding protein A N-terminus (FbpA); COGs: COG1293 RNA-binding protein homologous to eukaryotic snRNP; InterPro IPR008616:IPR008532; KEGG: npu:Npun_R4578 fibronectin-binding A domain-containing protein; PFAM: Fibronectin-binding A, N-terminal; Domain of unknown function DUF814; SPTR: Fibronectin-binding A-like.
 
 
 0.774
AFZ07990.1
Chromosome segregation and condensation protein, ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
 
 
 
 0.771
AFZ04756.1
Transposase, IS605 OrfB family; PFAM: Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region; COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR010095; KEGG: ana:alr7153 hypothetical protein; PFAM: Transposase, IS605 OrfB, C-terminal; SPTR: Putative uncharacterized protein; TIGRFAM: Transposase, IS605 OrfB, C-terminal.
       0.486
AFZ07423.1
KEGG: ter:Tery_1229 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.484
AFZ07596.1
Translation initiation factor IF-2 domain-containing protein; COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; KEGG: npu:Npun_R6091 translation initiation factor IF-2 domain-containing protein; SPTR: Translation initiation factor IF-2 domain protein.
  
    0.482
AFZ07597.1
KEGG: npu:Npun_R6088 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.482
AFZ07703.1
KEGG: ppp:PHYPADRAFT_129734 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.482
AFZ04754.1
PFAM: PRC-barrel domain; InterPro IPR007903; KEGG: ter:Tery_1550 PRC-barrel; PFAM: PRC-barrel; SPTR: PRC-barrel.
       0.478
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
  
 
 0.478
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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