STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ04930.1Abortive infection protein; PFAM: CAAX amino terminal protease family; InterPro IPR003675; KEGG: bbe:BBR47_28850 putative membrane-bound metalloprotease; PFAM: Abortive infection protein; SPTR: Putative membrane-bound metalloprotease. (256 aa)    
Predicted Functional Partners:
AFZ04929.1
PFAM: Protein of unknown function (DUF1349); COGs: COG3506 conserved hypothetical protein; InterPro IPR009784; KEGG: sli:Slin_1579 protein of unknown function DUF1349; PFAM: Protein of unknown function DUF1349; SPTR: Putative uncharacterized protein.
       0.741
AFZ05328.1
Methyltransferase type 12; COGs: COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1 4-benzoquinol methylase; InterPro IPR013217; KEGG: ter:Tery_2390 methyltransferase type 11; PFAM: Methyltransferase type 12; SPTR: Methyltransferase type 11.
  
     0.542
AFZ05986.1
Helicase superfamily 3; COGs: COG3378 ATPase; KEGG: npu:Npun_EF019 helicase superfamily 3; SPTR: Helicase superfamily 3.
  
     0.479
AFZ09215.1
Hypothetical protein; COGs: COG3378 ATPase; KEGG: npu:Npun_EF019 helicase superfamily 3; SPTR: Helicase superfamily 3.
  
     0.466
AFZ08991.1
PFAM: 2OG-Fe(II) oxygenase superfamily; COGs: COG3751 proline hydroxylase; InterPro IPR005123:IPR006620; KEGG: ter:Tery_1127 prolyl 4-hydroxylase, alpha subunit; PFAM: Oxoglutarate/iron-dependent oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; SPTR: Prolyl 4-hydroxylase, alpha subunit.
  
     0.450
AFZ08005.1
PFAM: YcaO-like family; TIGRFAM: uncharacterized domain; bacteriocin biosynthesis cyclodehydratase domain; bacteriocin biosynthesis docking scaffold, SagD family; COGs: COG1944 conserved hypothetical protein; InterPro IPR022291:IPR003776; KEGG: ter:Tery_2355 hypothetical protein; PFAM: YcaO-like; SPTR: Putative uncharacterized protein; TIGRFAM: Bacteriocin biosynthesis, cyclodehydratase; YcaO-like.
  
     0.436
AFZ05359.1
Hypothetical protein; COGs: COG3378 ATPase; KEGG: cyc:PCC7424_5881 DNA primase catalytic core domain protein; SPTR: DNA primase catalytic core domain protein.
  
     0.416
AFZ05831.1
Protein of unknown function DUF893, YccS/YhfK; PFAM: Fusaric acid resistance protein family; COGs: COG1289 membrane protein; KEGG: npu:Npun_R2278 protein of unknown function DUF893, YccS/YhfK; SPTR: Putative uncharacterized protein.
  
     0.412
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.